SCpubr: Generate Publication Ready Visualizations of Single Cell Transcriptomics Data

A system that provides a streamlined way of generating publication ready plots for known Single-Cell transcriptomics data in a “publication ready” format. This is, the goal is to automatically generate plots with the highest quality possible, that can be used right away or with minimal modifications for a research article.

Version: 2.0.2
Depends: R (≥ 4.0.0)
Suggests: AnnotationDbi, assertthat, AUCell, circlize, cli, cluster, clusterProfiler, colorspace, ComplexHeatmap, covr, decoupleR, dplyr (≥ 1.1.0), enrichplot, forcats, ggalluvial, ggbeeswarm, ggdist, ggExtra, ggh4x, ggnewscale, ggplot2 (≥ 3.4.0), ggplotify, ggrastr, ggrepel, ggridges, ggsignif, graphics, infercnv, knitr, labeling, magrittr, MASS, Matrix, methods, Nebulosa,, patchwork, pheatmap, plyr, purrr, qpdf, RColorBrewer, rjags, rlang, rmarkdown, scales, scattermore, Seurat, SeuratObject, sf, stringr, svglite, testthat (≥ 3.0.0), tibble, tidyr, UCell, viridis, withr
Published: 2023-10-11
DOI: 10.32614/CRAN.package.SCpubr
Author: Enrique Blanco-Carmona ORCID iD [cre, aut]
Maintainer: Enrique Blanco-Carmona <scpubr at>
License: GPL-3
NeedsCompilation: no
Citation: SCpubr citation info
Materials: README NEWS
CRAN checks: SCpubr results


Reference manual: SCpubr.pdf
Vignettes: reference_manual


Package source: SCpubr_2.0.2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): SCpubr_2.0.2.tgz, r-oldrel (arm64): SCpubr_2.0.2.tgz, r-release (x86_64): SCpubr_2.0.2.tgz, r-oldrel (x86_64): SCpubr_2.0.2.tgz
Old sources: SCpubr archive


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