CRAN Package Check Results for Package bridgesampling

Last updated on 2020-12-02 02:51:49 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0-0 12.54 241.18 253.72 OK
r-devel-linux-x86_64-debian-gcc 1.0-0 8.56 177.51 186.07 OK
r-devel-linux-x86_64-fedora-clang 1.0-0 299.65 OK
r-devel-linux-x86_64-fedora-gcc 1.0-0 300.06 OK
r-devel-windows-ix86+x86_64 1.0-0 20.00 277.00 297.00 ERROR
r-patched-linux-x86_64 1.0-0 8.76 236.25 245.01 OK
r-patched-solaris-x86 1.0-0 321.00 OK
r-release-linux-x86_64 1.0-0 8.84 234.62 243.46 OK
r-release-macos-x86_64 1.0-0 OK
r-release-windows-ix86+x86_64 1.0-0 21.00 206.00 227.00 ERROR
r-oldrel-macos-x86_64 1.0-0 OK
r-oldrel-windows-ix86+x86_64 1.0-0 16.00 267.00 283.00 ERROR

Check Details

Version: 1.0-0
Check: tests
Result: ERROR
     Running 'testthat.R' [143s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > Sys.setenv("R_TESTS" = "")
     > library(testthat)
     >
     > test_check("bridgesampling")
     Loading required package: bridgesampling
     -- Skip (test-bridge_sampler_Rcpp.R:6:3): bridge sampler matches anlytical value
     Reason: On CRAN
    
     -- Skip (test-bridge_sampler_Rcpp_parallel.R:6:3): bridge sampler matches anlyti
     Reason: On CRAN
    
     -- Skip (test-bridge_sampler_mcmc.list.R:6:3): bridge sampler matches analytical
     Reason: On CRAN
    
     -- Skip (test-bridge_sampler_parallel.R:6:3): bridge sampler matches anlytical v
     Reason: On CRAN
    
     Median of 10 bridge sampling estimates
     of the log marginal likelihood: 4293.156
     Range of estimates: 4290.976 to 4294.028
     Interquartile range: 1.62594
     Method: normal
     -- Skip (test-nimble_bridge_sampler.R:5:3): nimble support works ---------------
     Reason: On CRAN
    
     make cmd is
     make -f "D:/RCompile/recent/R/etc/x64/Makeconf" -f "D:/RCompile/recent/R/etc/x64/Makevars.site" -f "D:/RCompile/recent/R/share/make/winshlib.mk" CXX='$(CXX14) $(CXX14STD)' CXXFLAGS='$(CXX14FLAGS)' CXXPICFLAGS='$(CXX14PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX14LDFLAGS)' SHLIB_LD='$(SHLIB_CXX14LD)' SHLIB="file2db107e434ccd.dll" WIN=64 TCLBIN=64 OBJECTS="file2db107e434ccd.o"
    
     make would use
     make[1]: Entering directory '/d/temp/RtmpwfRhbY'
     if test "zfile2db107e434ccd.o" != "z"; then \
     if test -e "file2db107e434ccd-win.def"; then \
     echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file2db107e434ccd.dll file2db107e434ccd-win.def file2db107e434ccd.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
     d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file2db107e434ccd.dll file2db107e434ccd-win.def file2db107e434ccd.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
     else \
     echo EXPORTS > tmp.def; \
     d:/Compiler/rtools40/mingw64/bin/nm file2db107e434ccd.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
     echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file2db107e434ccd.dll tmp.def file2db107e434ccd.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
     d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file2db107e434ccd.dll tmp.def file2db107e434ccd.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
     rm -f tmp.def; \
     fi \
     fi
     make[1]: Leaving directory '/d/temp/RtmpwfRhbY'
     -- ERROR (test-stan_bridge_sampler_basic.R:56:5): stan_bridge_sampler ----------
     Error: D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file2db107e434ccd.o:file2db107e434ccd.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D1Ev[_ZN3tbb8internal26task_scheduler_observer_v3D1Ev]+0x14): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file2db107e434ccd.o:file2db107e434ccd.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1c): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file2db107e434ccd.o:file2db107e434ccd.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x15): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file2db107e434ccd.o:file2db107e434ccd.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x47): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file2db107e434ccd.o:file2db107e434ccd.cpp:(.text$_ZN4stan4math16ad_tape_observerD0Ev[_ZN4stan4math16ad_tape_observerD0Ev]+0x15): more undefined references to `tbb::internal::task_scheduler_observer_v3::observe(bool)' followcollect2.exe: error: ld returned 1 exit status
     Backtrace:
     x
     1. +-utils::capture.output(...)
     2. | \-base::withVisible(...elt(i))
     3. +-base::suppressMessages(...)
     4. | \-base::withCallingHandlers(...)
     5. \-rstan::stan_model(model_code = stancodeH0, model_name = "stanmodel")
     6. \-rstan:::cxxfunctionplus(...)
     7. +-pkgbuild::with_build_tools(...)
     8. | \-withr::with_path(rtools_path(), code)
     9. | \-base::force(code)
     10. \-inline::cxxfunction(...)
     11. \-inline:::compileCode(f, code, language = language, verbose = verbose)
    
     -- ERROR (test-stan_bridge_sampler_basic.R:56:5): stan_bridge_sampler ----------
     Error: invalid connection
     Backtrace:
     x
     1. +-utils::capture.output(...) test-stan_bridge_sampler_basic.R:56:4
     2. | \-base::withVisible(...elt(i))
     3. +-base::suppressMessages(...)
     4. | \-base::withCallingHandlers(...)
     5. \-rstan::stan_model(model_code = stancodeH0, model_name = "stanmodel")
     6. \-rstan:::cxxfunctionplus(...)
     7. \-base::sink(type = "output")
    
     -- Skip (test-stan_bridge_sampler_basic.R:95:3): stan_bridge_sampler in multicor
     Reason: On CRAN
    
     -- Skip (test-stan_bridge_sampler_bugs.R:7:3): bridge_sampler.stanfit multicore
     Reason: On CRAN
    
     -- Skip (test-stan_bridge_sampler_bugs.R:51:3): turtle example -----------------
     Reason: On CRAN
    
     starting worker pid=96748 on localhost:11295 at 04:27:14.905
     starting worker pid=142036 on localhost:11295 at 04:27:15.274
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 1).
     Chain 1:
     Chain 1: Gradient evaluation took 0 seconds
     Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 1: Adjust your expectations accordingly!
     Chain 1:
     Chain 1:
     Chain 1: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 1: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 1: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 1: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 1: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 1: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 1: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 1: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 1: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 1: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 1: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 1: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 1:
     Chain 1: Elapsed Time: 0.41 seconds (Warm-up)
     Chain 1: 0.579 seconds (Sampling)
     Chain 1: 0.989 seconds (Total)
     Chain 1:
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 2).
     Chain 2:
     Chain 2: Gradient evaluation took 0 seconds
     Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 2: Adjust your expectations accordingly!
     Chain 2:
     Chain 2:
     Chain 2: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 2: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 2: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 2: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 2: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 2: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 2: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 2: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 2: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 2: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 2:
     Chain 2: Elapsed Time: 0.402 seconds (Warm-up)
     Chain 2: 0.558 seconds (Sampling)
     Chain 2: 0.96 seconds (Total)
     Chain 2:
     Iteration: 1
     Iteration: 2
     Iteration: 3
     Iteration: 4
     Iteration: 5
     starting worker pid=38960 on localhost:11295 at 04:27:35.258
     starting worker pid=87468 on localhost:11295 at 04:27:35.594
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 1).
     Chain 1:
     Chain 1: Gradient evaluation took 0 seconds
     Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 1: Adjust your expectations accordingly!
     Chain 1:
     Chain 1:
     Chain 1: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 1: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 1: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 1: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 1: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 1: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 1: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 1: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 1: Iteration: 3500 / 5000 [ 70%] (Sampling)
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 2).
     Chain 2:
     Chain 2: Gradient evaluation took 0 seconds
     Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 2: Adjust your expectations accordingly!
     Chain 2:
     Chain 2:
     Chain 2: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 1: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 2: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 1: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 2: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 1: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 1:
     Chain 1: Elapsed Time: 0.708 seconds (Warm-up)
     Chain 1: 1.28 seconds (Sampling)
     Chain 1: 1.988 seconds (Total)
     Chain 1:
     Chain 2: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 2: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 2: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 2: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 2: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 2:
     Chain 2: Elapsed Time: 0.713 seconds (Warm-up)
     Chain 2: 0.849 seconds (Sampling)
     Chain 2: 1.562 seconds (Total)
     Chain 2:
     Iteration: 1
     Iteration: 2
     Iteration: 3
     Iteration: 4
     -- Skip (test-stanreg_bridge_sampler_basic.R:21:3): stan_bridge_sampler in multi
     Reason: On CRAN
    
     -- Skip (test-vignette_example_jags.R:6:3): bridge sampler yields correct result
     Reason: On CRAN
    
     -- Skip (test-vignette_example_nimble.R:6:3): bridge sampler yields correct resu
     Reason: On CRAN
    
     -- Skip (test-vignette_example_stan.R:6:3): bridge sampler yields correct result
     Reason: On CRAN
    
     -- Skip (test-vignette_stan_ttest.R:6:3): bridge sampler yields correct results
     Reason: On CRAN
    
     -- Skipped tests --------------------------------------------------------------
     * On CRAN (13)
    
     == testthat results ===========================================================
     ERROR (test-stan_bridge_sampler_basic.R:56:5): stan_bridge_sampler
     ERROR (test-stan_bridge_sampler_basic.R:56:5): stan_bridge_sampler
    
     [ FAIL 2 | WARN 0 | SKIP 13 | PASS 64 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.0-0
Check: tests
Result: ERROR
     Running 'testthat.R' [109s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > Sys.setenv("R_TESTS" = "")
     > library(testthat)
     >
     > test_check("bridgesampling")
     Loading required package: bridgesampling
     -- Skip (test-bridge_sampler_Rcpp.R:6:3): bridge sampler matches anlytical value
     Reason: On CRAN
    
     -- Skip (test-bridge_sampler_Rcpp_parallel.R:6:3): bridge sampler matches anlyti
     Reason: On CRAN
    
     -- Skip (test-bridge_sampler_mcmc.list.R:6:3): bridge sampler matches analytical
     Reason: On CRAN
    
     -- Skip (test-bridge_sampler_parallel.R:6:3): bridge sampler matches anlytical v
     Reason: On CRAN
    
     Median of 10 bridge sampling estimates
     of the log marginal likelihood: 4293.156
     Range of estimates: 4290.976 to 4294.028
     Interquartile range: 1.62594
     Method: normal
     -- Skip (test-nimble_bridge_sampler.R:5:3): nimble support works ---------------
     Reason: On CRAN
    
     make cmd is
     make -f "D:/RCompile/recent/R-40~1.3/etc/x64/Makeconf" -f "D:/RCompile/recent/R-40~1.3/etc/x64/Makevars.site" -f "D:/RCompile/recent/R-40~1.3/share/make/winshlib.mk" CXX='$(CXX14) $(CXX14STD)' CXXFLAGS='$(CXX14FLAGS)' CXXPICFLAGS='$(CXX14PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX14LDFLAGS)' SHLIB_LD='$(SHLIB_CXX14LD)' SHLIB="file1b3d039764b36.dll" WIN=64 TCLBIN=64 OBJECTS="file1b3d039764b36.o"
    
     make would use
     make[1]: Entering directory '/d/temp/RtmpYfIw7f'
     if test "zfile1b3d039764b36.o" != "z"; then \
     if test -e "file1b3d039764b36-win.def"; then \
     echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file1b3d039764b36.dll file1b3d039764b36-win.def file1b3d039764b36.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.3/bin/x64" -lR ; \
     d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file1b3d039764b36.dll file1b3d039764b36-win.def file1b3d039764b36.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.3/bin/x64" -lR ; \
     else \
     echo EXPORTS > tmp.def; \
     d:/Compiler/rtools40/mingw64/bin/nm file1b3d039764b36.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
     echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file1b3d039764b36.dll tmp.def file1b3d039764b36.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.3/bin/x64" -lR ; \
     d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file1b3d039764b36.dll tmp.def file1b3d039764b36.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.3/bin/x64" -lR ; \
     rm -f tmp.def; \
     fi \
     fi
     make[1]: Leaving directory '/d/temp/RtmpYfIw7f'
     -- ERROR (???): stan_bridge_sampler --------------------------------------------
     Error: D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file1b3d039764b36.o:file1b3d039764b36.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D1Ev[_ZN3tbb8internal26task_scheduler_observer_v3D1Ev]+0x14): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file1b3d039764b36.o:file1b3d039764b36.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1c): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file1b3d039764b36.o:file1b3d039764b36.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x15): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file1b3d039764b36.o:file1b3d039764b36.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x47): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file1b3d039764b36.o:file1b3d039764b36.cpp:(.text$_ZN4stan4math16ad_tape_observerD0Ev[_ZN4stan4math16ad_tape_observerD0Ev]+0x15): more undefined references to `tbb::internal::task_scheduler_observer_v3::observe(bool)' followcollect2.exe: error: ld returned 1 exit status
     Backtrace:
     x
     1. +-base::suppressMessages(...)
     2. | \-base::withCallingHandlers(...)
     3. \-rstan::stan_model(model_code = stancodeH0, model_name = "stanmodel")
     4. \-rstan:::cxxfunctionplus(...)
     5. +-pkgbuild::with_build_tools(...)
     6. | \-withr::with_path(rtools_path(), code)
     7. | \-base::force(code)
     8. \-inline::cxxfunction(...)
     9. \-inline:::compileCode(f, code, language = language, verbose = verbose)
    
     -- ERROR (???): stan_bridge_sampler --------------------------------------------
     Error: invalid connection
     Backtrace:
     x
     1. +-base::suppressMessages(...)
     2. | \-base::withCallingHandlers(...)
     3. \-rstan::stan_model(model_code = stancodeH0, model_name = "stanmodel")
     4. \-rstan:::cxxfunctionplus(...)
     5. \-base::sink(type = "output")
    
     -- Skip (test-stan_bridge_sampler_basic.R:95:3): stan_bridge_sampler in multicor
     Reason: On CRAN
    
     -- Skip (test-stan_bridge_sampler_bugs.R:7:3): bridge_sampler.stanfit multicore
     Reason: On CRAN
    
     -- Skip (test-stan_bridge_sampler_bugs.R:51:3): turtle example -----------------
     Reason: On CRAN
    
     starting worker pid=42952 on localhost:11156 at 02:50:07.123
     starting worker pid=142036 on localhost:11156 at 02:50:07.357
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 1).
     Chain 1:
     Chain 1: Gradient evaluation took 0 seconds
     Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 1: Adjust your expectations accordingly!
     Chain 1:
     Chain 1:
     Chain 1: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 1: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 1: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 1: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 1: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 1: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 1: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 1: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 1: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 1: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 1: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 1: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 1:
     Chain 1: Elapsed Time: 0.483 seconds (Warm-up)
     Chain 1: 0.687 seconds (Sampling)
     Chain 1: 1.17 seconds (Total)
     Chain 1:
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 2).
     Chain 2:
     Chain 2: Gradient evaluation took 0 seconds
     Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 2: Adjust your expectations accordingly!
     Chain 2:
     Chain 2:
     Chain 2: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 2: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 2: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 2: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 2: Iteration: 2000 / 5000 [ 40%] (Warmup)
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     Chain 2: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 2:
     Chain 2: Elapsed Time: 0.281 seconds (Warm-up)
     Chain 2: 0.421 seconds (Sampling)
     Chain 2: 0.702 seconds (Total)
     Chain 2:
     Iteration: 1
     Iteration: 2
     Iteration: 3
     Iteration: 4
     Iteration: 5
     starting worker pid=160196 on localhost:11156 at 02:50:24.253
     starting worker pid=208712 on localhost:11156 at 02:50:24.685
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 1).
     Chain 1:
     Chain 1: Gradient evaluation took 0 seconds
     Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 1: Adjust your expectations accordingly!
     Chain 1:
     Chain 1:
     Chain 1: Iteration: 1 / 5000 [ 0%] (Warmup)
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     Chain 1: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 1: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 1:
     Chain 1: Elapsed Time: 0.468 seconds (Warm-up)
     Chain 1: 0.858 seconds (Sampling)
     Chain 1: 1.326 seconds (Total)
     Chain 1:
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 2).
     Chain 2:
     Chain 2: Gradient evaluation took 0 seconds
     Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 2: Adjust your expectations accordingly!
     Chain 2:
     Chain 2:
     Chain 2: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 2: Iteration: 500 / 5000 [ 10%] (Warmup)
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     Chain 2: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 2:
     Chain 2: Elapsed Time: 0.811 seconds (Warm-up)
     Chain 2: 0.967 seconds (Sampling)
     Chain 2: 1.778 seconds (Total)
     Chain 2:
     Iteration: 1
     Iteration: 2
     Iteration: 3
     Iteration: 4
     -- Skip (test-stanreg_bridge_sampler_basic.R:21:3): stan_bridge_sampler in multi
     Reason: On CRAN
    
     -- Skip (test-vignette_example_jags.R:6:3): bridge sampler yields correct result
     Reason: On CRAN
    
     -- Skip (test-vignette_example_nimble.R:6:3): bridge sampler yields correct resu
     Reason: On CRAN
    
     -- Skip (test-vignette_example_stan.R:6:3): bridge sampler yields correct result
     Reason: On CRAN
    
     -- Skip (test-vignette_stan_ttest.R:6:3): bridge sampler yields correct results
     Reason: On CRAN
    
     -- Skipped tests --------------------------------------------------------------
     * On CRAN (13)
    
     == testthat results ===========================================================
     ERROR (???): stan_bridge_sampler
     ERROR (???): stan_bridge_sampler
    
     [ FAIL 2 | WARN 0 | SKIP 13 | PASS 64 ]
     Error: Test failures
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 1.0-0
Check: tests
Result: ERROR
     Running 'testthat.R' [147s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > Sys.setenv("R_TESTS" = "")
     > library(testthat)
     >
     > test_check("bridgesampling")
     Loading required package: bridgesampling
     -- Skip (test-bridge_sampler_Rcpp.R:6:3): bridge sampler matches anlytical value
     Reason: On CRAN
    
     -- Skip (test-bridge_sampler_Rcpp_parallel.R:6:3): bridge sampler matches anlyti
     Reason: On CRAN
    
     -- Skip (test-bridge_sampler_mcmc.list.R:6:3): bridge sampler matches analytical
     Reason: On CRAN
    
     -- Skip (test-bridge_sampler_parallel.R:6:3): bridge sampler matches anlytical v
     Reason: On CRAN
    
     Median of 10 bridge sampling estimates
     of the log marginal likelihood: 4293.156
     Range of estimates: 4290.976 to 4294.028
     Interquartile range: 1.62594
     Method: normal
     -- Skip (test-nimble_bridge_sampler.R:5:3): nimble support works ---------------
     Reason: On CRAN
    
     make cmd is
     make -f "D:/RCompile/recent/R-36~1.3/etc/x64/Makeconf" -f "D:/RCompile/recent/R-36~1.3/etc/x64/Makevars.site" -f "D:/RCompile/recent/R-36~1.3/share/make/winshlib.mk" CXX='$(CXX11) $(CXX11STD)' CXXFLAGS='$(CXX11FLAGS)' CXXPICFLAGS='$(CXX11PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX11LDFLAGS)' SHLIB_LD='$(SHLIB_CXX11LD)' SHLIB="file2933868c4331d.dll" WIN=64 TCLBIN=64 OBJECTS="file2933868c4331d.o"
    
     make would use
     make[1]: Entering directory `/cygdrive/d/temp/RtmpOsFVTn'
     if test "zfile2933868c4331d.o" != "z"; then \
     if test -e "file2933868c4331d-win.def"; then \
     echo d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -shared -s -static-libgcc -o file2933868c4331d.dll file2933868c4331d-win.def file2933868c4331d.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-36~1.3/bin/x64" -lR ; \
     d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -shared -s -static-libgcc -o file2933868c4331d.dll file2933868c4331d-win.def file2933868c4331d.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-36~1.3/bin/x64" -lR ; \
     else \
     echo EXPORTS > tmp.def; \
     d:/Compiler/gcc-4.9.3/mingw_64/bin/nm file2933868c4331d.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
     echo d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -shared -s -static-libgcc -o file2933868c4331d.dll tmp.def file2933868c4331d.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-36~1.3/bin/x64" -lR ; \
     d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -shared -s -static-libgcc -o file2933868c4331d.dll tmp.def file2933868c4331d.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-36~1.3/bin/x64" -lR ; \
     rm -f tmp.def; \
     fi \
     fi
     make[1]: Leaving directory `/cygdrive/d/temp/RtmpOsFVTn'
     -- ERROR (???): stan_bridge_sampler --------------------------------------------
     Error: file2933868c4331d.o:file2933868c4331d.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D1Ev[_ZN3tbb8internal26task_scheduler_observer_v3D1Ev]+0x14): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'file2933868c4331d.o:file2933868c4331d.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1c): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'file2933868c4331d.o:file2933868c4331d.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x15): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'file2933868c4331d.o:file2933868c4331d.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x47): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'file2933868c4331d.o:file2933868c4331d.cpp:(.text$_ZN4stan4math16ad_tape_observerD0Ev[_ZN4stan4math16ad_tape_observerD0Ev]+0x15): more undefined references to `tbb::internal::task_scheduler_observer_v3::observe(bool)' followcollect2.exe: error: ld returned 1 exit status
     Backtrace:
     x
     1. +-base::suppressMessages(...)
     2. | \-base::withCallingHandlers(expr, message = function(c) invokeRestart("muffleMessage"))
     3. \-rstan::stan_model(model_code = stancodeH0, model_name = "stanmodel")
     4. \-rstan:::cxxfunctionplus(...)
     5. +-pkgbuild::with_build_tools(...)
     6. | \-withr::with_path(rtools_path(), code)
     7. | \-base::force(code)
     8. \-inline::cxxfunction(...)
     9. \-inline:::compileCode(f, code, language = language, verbose = verbose)
    
     -- ERROR (???): stan_bridge_sampler --------------------------------------------
     Error: invalid connection
     Backtrace:
     x
     1. +-base::suppressMessages(...)
     2. | \-base::withCallingHandlers(expr, message = function(c) invokeRestart("muffleMessage"))
     3. \-rstan::stan_model(model_code = stancodeH0, model_name = "stanmodel")
     4. \-rstan:::cxxfunctionplus(...)
     5. \-base::sink(type = "output")
    
     -- Skip (test-stan_bridge_sampler_basic.R:95:3): stan_bridge_sampler in multicor
     Reason: On CRAN
    
     -- Skip (test-stan_bridge_sampler_bugs.R:7:3): bridge_sampler.stanfit multicore
     Reason: On CRAN
    
     -- Skip (test-stan_bridge_sampler_bugs.R:51:3): turtle example -----------------
     Reason: On CRAN
    
     starting worker pid=47748 on localhost:11236 at 12:27:55.941
     starting worker pid=26236 on localhost:11236 at 12:27:56.309
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 1).
     Chain 1:
     Chain 1: Gradient evaluation took 0 seconds
     Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 1: Adjust your expectations accordingly!
     Chain 1:
     Chain 1:
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     Chain 1: Iteration: 3500 / 5000 [ 70%] (Sampling)
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 2).
     Chain 2:
     Chain 2: Gradient evaluation took 0 seconds
     Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 2: Adjust your expectations accordingly!
     Chain 2:
     Chain 2:
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     Chain 2: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 1: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 1:
     Chain 1: Elapsed Time: 0.464 seconds (Warm-up)
     Chain 1: 1.536 seconds (Sampling)
     Chain 1: 2 seconds (Total)
     Chain 1:
     Chain 2: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 2: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 2: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 2:
     Chain 2: Elapsed Time: 0.444 seconds (Warm-up)
     Chain 2: 1.408 seconds (Sampling)
     Chain 2: 1.852 seconds (Total)
     Chain 2:
     Iteration: 1
     Iteration: 2
     Iteration: 3
     Iteration: 4
     Iteration: 5
     starting worker pid=111388 on localhost:11236 at 12:28:16.301
     starting worker pid=164640 on localhost:11236 at 12:28:16.638
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 1).
     Chain 1:
     Chain 1: Gradient evaluation took 0 seconds
     Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 1: Adjust your expectations accordingly!
     Chain 1:
     Chain 1:
     Chain 1: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 1: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 1: Iteration: 1000 / 5000 [ 20%] (Warmup)
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     Chain 1: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 1: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 1: Iteration: 2501 / 5000 [ 50%] (Sampling)
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 2).
     Chain 2:
     Chain 2: Gradient evaluation took 0 seconds
     Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 2: Adjust your expectations accordingly!
     Chain 2:
     Chain 2:
     Chain 2: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 1: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 2: Iteration: 500 / 5000 [ 10%] (Warmup)
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     Chain 2: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 2: Iteration: 2501 / 5000 [ 50%] (Sampling)
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     Chain 2: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 1: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 1: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 1:
     Chain 1: Elapsed Time: 0.749 seconds (Warm-up)
     Chain 1: 2.06 seconds (Sampling)
     Chain 1: 2.809 seconds (Total)
     Chain 1:
     Chain 2: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 2:
     Chain 2: Elapsed Time: 0.749 seconds (Warm-up)
     Chain 2: 1.865 seconds (Sampling)
     Chain 2: 2.614 seconds (Total)
     Chain 2:
     Iteration: 1
     Iteration: 2
     Iteration: 3
     Iteration: 4
     -- Skip (test-stanreg_bridge_sampler_basic.R:21:3): stan_bridge_sampler in multi
     Reason: On CRAN
    
     -- Skip (test-vignette_example_jags.R:6:3): bridge sampler yields correct result
     Reason: On CRAN
    
     -- Skip (test-vignette_example_nimble.R:6:3): bridge sampler yields correct resu
     Reason: On CRAN
    
     -- Skip (test-vignette_example_stan.R:6:3): bridge sampler yields correct result
     Reason: On CRAN
    
     -- Skip (test-vignette_stan_ttest.R:6:3): bridge sampler yields correct results
     Reason: On CRAN
    
     -- Skipped tests --------------------------------------------------------------
     * On CRAN (13)
    
     == testthat results ===========================================================
     ERROR (???): stan_bridge_sampler
     ERROR (???): stan_bridge_sampler
    
     [ FAIL 2 | WARN 0 | SKIP 13 | PASS 64 ]
     Error: Test failures
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64